Package: ritalic 0.12.0

Matteo Conti

ritalic: Interface to the ITALIC Database of Lichen Biodiversity

A programmatic interface to the Web Service methods provided by ITALIC (<https://italic.units.it>). ITALIC is a database of lichen data in Italy and bordering European countries. 'ritalic' includes functions for retrieving information about lichen scientific names, geographic distribution, ecological data, morpho-functional traits and identification keys. More information about the data is available at <https://italic.units.it/?procedure=base&t=59&c=60>. The API documentation is available at <https://italic.units.it/?procedure=api>.

Authors:Matteo Conti [aut, cre], Luana Francesconi [aut], Alice Musina [aut], Luca Di Nuzzo [aut], Gabriele Gheza [aut], Chiara Pistocchi [aut], Juri Nascimbene [aut], Pier Luigi Nimis [aut], Stefano Martellos [aut]

ritalic_0.12.0.tar.gz
ritalic_0.12.0.zip(r-4.7)ritalic_0.12.0.zip(r-4.6)ritalic_0.12.0.zip(r-4.5)
ritalic_0.12.0.tgz(r-4.6-any)ritalic_0.12.0.tgz(r-4.5-any)
ritalic_0.12.0.tar.gz(r-4.7-any)ritalic_0.12.0.tar.gz(r-4.6-any)
ritalic_0.12.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
ritalic/json (API)

# Install 'ritalic' in R:

install.packages('ritalic', repos = c('https://plant-data.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/plant-data/ritalic/issues

On CRAN:

biodiversity ecology fungi italic lichen

3.48 score 3 stars 6 scripts 513 downloads 14 exports 37 dependencies

Last updated from:ae5a6d8e3a. Checks:9 OK. Indexed: yes.

Target	Result	Time
linux-devel-x86_64	OK	175
source / vignettes	OK	173
linux-release-x86_64	OK	149
macos-release-arm64	OK	230
macos-oldrel-arm64	OK	270
windows-devel	OK	123
windows-release	OK	169
windows-oldrel	OK	101
wasm-release	OK	128

Exports:italic_checklist italic_description italic_distribution_map italic_ecology_traits italic_ecoregions_distribution italic_identification_key italic_match italic_name_usage italic_occurrences italic_occurrences_references italic_regions_distribution italic_taxon_data italic_taxonomy italic_traits_pa

Dependencies:askpass class classInt cli cpp11 curl DBI e1071 farver ggplot2 glue gtable httr2 isoband jsonlite KernSmooth labeling lifecycle magrittr MASS openssl proxy R6 rappdirs RColorBrewer Rcpp rlang s2 S7 scales sf sys units vctrs viridisLite withr wk

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Get species names in the checklist of the lichens of Italy	italic_checklist
Get descriptions of lichen taxa	italic_description
Create distribution map of a lichen taxon	italic_distribution_map
Get ecology data and morphological traits of lichen taxa	italic_ecology_traits
Get distribution of lichen taxa across Italian ecoregions	italic_ecoregions_distribution
Generate interactive identification keys for lichen taxa	italic_identification_key
Match scientific names of lichens against the database of ITALIC	italic_match
Get details of species names	italic_name_usage
Get occurrence records for lichen taxa	italic_occurrences
Get scientific references for occurrence data	italic_occurrences_references
Get distribution of lichen taxa in Italy	italic_regions_distribution
Get data of lichen taxa	italic_taxon_data
Get taxonomic classification of lichen taxa	italic_taxonomy
Get a presence-absence matrix of lichen traits	italic_traits_pa